Publications

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* – co-first authorship

P. Avdeyev, S. Jiang, and M. A. Alekseyev. ‘‘Linearization of Median Genomes under the DCJ-Indel Model’’. Evolutionary Bioinformatics, 2019, (in press).

P. Avdeyev, S. Jiang, and M. A. Alekseyev. Implicit Transpositions in DCJ Scenarios, Front. Genet. 8 (2017), 212. doi

P. Avdeyev*, N. Alexeev*, Y. Rong, and M. A. Alekseyev. ‘‘A Unified ILP Framework for Genome Median, Halving, and Aliquoting Problems under DCJ’’. Proceedings of the 15th Annual RECOMB Satellite Workshop on Comparative Genomics (RECOMB-CG 2017), Lecture Notes in Computer Science 10562 (2017), 156–178. doi

N. Alexeev*, P. Avdeyev*, and M. A. Alekseyev. ‘‘Comparative Genomics Meets Topology: a Novel View on Genome Median and Halving Problems’’. Proceedings of the 14th Annual RECOMB Satellite Workshop on Comparative Genomics (RECOMB-CG 2016), BMC Bioinformatics 17:Suppl 14 (2016), 3. doi

P. Avdeyev, S. Jiang, S. Aganezov, F. Hu, and M. A. Alekseyev. ‘‘Reconstruction of Ancestral Genomes in Presence of Gene Gain and Loss’’. Journal of Computational Biology 23:3 (2016), 1–15. doi, bioRxiv.